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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BRCA rs13077302 chr3:46329475 T/C 3.08E-6 1027 22.03 18.43 20.4 KM Plot
BRCA rs13078564 chr3:46330205 T/C 3.08E-6 1027 22.03 18.43 20.4 KM Plot
BRCA rs13092160 chr3:46254791 A/G 2.78E-8 1028 22.03 20.27 16.8 KM Plot
BRCA rs13093063 chr3:46329368 C/T 3.08E-6 1027 22.03 18.43 20.4 KM Plot
BRCA rs13095946 chr3:46253812 G/A 4.89E-7 1024 22.03 18.4 21.33 KM Plot
BRCA rs13103 chr19:53115843 G/A 2.82E-5 1012 21.3 23.33 21.77 KM Plot
BRCA rs1380840 chr15:64267665 A/T 3.89E-6 1028 21.7 20.9 15.17 KM Plot
BRCA rs138635356 chr18:44689220 G/GA 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs139166573 chr6:43174785 T/C 3.55E-7 1016 21.8 20.73 12.57 KM Plot
BRCA rs139385646 chr7:54812727 A/AC 8.01E-6 1026 21.47 23.83 12.17 KM Plot
BRCA rs140078183 chr18:44688516 GT/G 5.05E-6 1027 21.7 21.67 18.23 KM Plot
BRCA rs140252745 chr1:41534081 AT/A 1.72E-5 1023 21.77 20.67 11.2 KM Plot
BRCA rs1406652 chr7:54837733 C/T 8.03E-6 1027 21.43 23.83 12.17 KM Plot
BRCA rs141089838 chr18:44618443 ACATATAAGGAAGAGGG/A 2.08E-5 1024 21.57 22.2 18.13 KM Plot
BRCA rs141941770 chr4:169263062 A/G 1.45E-5 1013 21.67 21.93 14.1 KM Plot